PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G294800.1
Common NameB456_007G294800, LOC105804829
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 315aa    MW: 34849 Da    PI: 6.6344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G294800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.5e-13113164155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Gorai.007G294800.1 113 QRMTHIAVERNRRRQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 164
                         79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.94E-11111165No hitNo description
Gene3DG3DSA:4.10.280.108.8E-14111168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16112181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-9118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MALEAVVFQQ DLFGYNSKDL YSLLGGNLSY EDIHFPHHNQ KSDEANNNFV NGGDSYWVSS  60
SSSPTSMAPP PPPDEATNNN VNGSSSSALD TSTSRPKRRR LKTRKNKEEI ENQRMTHIAV  120
ERNRRRQMNE YLSVLRSLMP ESYVQRGDQA SIIGGAINFV KELEHCVQLL SAKKETKERP  180
NGSSSGCSSP FGEFFTFPQY STSSTRGDNN SIPMNESMVE TRSAIADIEV TMVESHANLK  240
IRSKKGPAQL LKLVSGLNSM RLNILHLNVT TVDQTVLYSL SVKVEDDCKL TSVDDIATAV  300
NQLLGRIQEE AVLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100KRRRL
2113124RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012493064.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9SK912e-84BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A0D2R1H30.0A0A0D2R1H3_G
STRINGPOPTR_0013s02680.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-82bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]